Open Source

Tools

2021-04-12: SAINT (tool for super resolution)

This is the pypi pakage for the SAINT (Spatially Aware Interpolation NeTwork for Medical Slice Synthesis), you can execute the command “pip install py_saint” to install it. Just follow the description(https://pypi.org/project/py-SAINT/) if you have any questions while you are using this pakage.

Citation: C. Peng, W.-A. Lin, H. Liao, R. Chellappa, S. Kevin Zhou, “SAINT: Spatially Aware Interpolation NeTwork for Medical Slice Synthesis,” in IEEE CVPR, pp. 7747-7756, 2020.

Code

CTFilm20K CT Film Recovery via Disentangling Geometric Deformation and Illumination Variation: Simulated Datasets and Deep Models DATASET: LINK passwd: 7ou3

DecGAN: Chest X-ray Bone Suppression

DecGAN decomposes X-ray into separate components by taking advantage of the unpaired 3D knowledge from CT in the framework of the generative adversarial network (GAN).

DuDoNet

Code of the preparing metal artifact dataset in DuDoNet and DuDoNet++.

CTPelvic1K

Code of the paper “Deep Learning to Segment Pelvic Bones: Large-scale CT Datasets and Baseline Models”.

Cuda Spatial Deform

A fast tool to do image augmentation by CUDA on GPU.

Miss the point

Code of the paper “Miss the Point: Targeted Adversarial Attack on Multiple Landmark Detection”.

Universal U-Net

Code of the paper: “3D U2-Net: A 3D Universal U-Net for Multi-Domain Medical Image Segmentation.”

Marginal and Exclusion Loss

Code of the proposed Marginal loss and exclusion loss for partially supervised multi-organ segmentation.

Bounding Map

Code of the implementation of Bounding Map in MVP-Net.